Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs6516104 chr20:6089513 C/T 0.000116 289 25.93 26.4 9 KM Plot
KIRP rs6542940 chr2:100982144 A/T 0.000188 289 23.23 26.28 25.15 KM Plot
KIRP rs6555787 chr5:156433699 T/C 5.29E-6 288 12.1 25.57 26.28 KM Plot
KIRP rs6555818 chr5:156468363 T/G 1.04E-7 286 12.78 23.68 26.37 KM Plot
KIRP rs6555822 chr5:156473185 A/G 1.01E-7 286 12.78 22.47 26.37 KM Plot
KIRP rs6557814 chr8:24967592 C/T 3.74E-5 279 26.38 22.88 12.47 KM Plot
KIRP rs6561211 chr13:45784496 A/G 0 289 4.07 28.17 25.5 KM Plot
KIRP rs6593921 chr1:205062861 A/G 8.89E-5 288 23.02 27.73 23.1 KM Plot
KIRP rs6599644 chr10:124799164 C/G 4.2E-6 289 19.63 26.57 25.57 KM Plot
KIRP rs663262 chr11:86179076 T/C 0.000117 287 10.7 21.8 26.48 KM Plot
KIRP rs66461358 chr16:89535257 T/C 0.00014 282 25.53 26.37 19.9 KM Plot
KIRP rs66517471 chr15:60797394 T/A 3.78E-5 286 25.5 28.03 14.88 KM Plot
KIRP rs6656644 chr1:26595647 C/G 3.58E-6 288 25.62 29.77 14.38 KM Plot
KIRP rs6657778 chr1:187785245 T/C 0.000144 286 26.28 21.82 11.18 KM Plot
KIRP rs66583694 chr11:78037773 C/T 0.000161 285 26.28 26.38 20.27 KM Plot